STRINGSTRING
Bra002827 protein (Brassica rapa) - STRING interaction network
"Bra002827" - AT5G56280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002827AT5G56280 (E=3e-157) CSN6A | CSN6A (314 aa)    
Predicted Functional Partners:
Bra024548
AT1G22920 (E=3e-180) CSN5A, JAB1, AJH1 | CSN5A (COP9 SIGNALOSOME 5A) (356 aa)
     
  0.985
Bra012351
AT1G22920 (E=1e-170) CSN5A, JAB1, AJH1 | CSN5A (COP9 SIGNALOSOME 5A) (356 aa)
     
  0.985
Bra032666
AT1G02090 (E=1e-127) FUS5, CSN7, COP15, ATCSN7 | FUS5 (FUSCA 5); MAP kinase kinase (262 aa)
     
  0.982
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
     
  0.982
Bra007576
AT3G61140 (E=9e-215) FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | FUS6 (FUSCA 6) (436 aa)
     
  0.982
Bra003438
AT3G61140 (E=1e-142) FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | FUS6 (FUSCA 6) (453 aa)
     
  0.982
Bra000529
AT2G26990 (E=2e-233) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (439 aa)
     
  0.982
Bra035336
AT5G42970 (E=3e-207) COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8); protein binding (397 aa)
     
  0.981
Bra033654
AT5G42970 (E=4e-207) COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8); protein binding (397 aa)
     
  0.981
Bra023453
AT5G14250 (E=1e-180) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (425 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]