STRINGSTRING
Bra002832 protein (Brassica rapa) - STRING interaction network
"Bra002832" - AT5G56240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002832AT5G56240 (E=2e-279) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- HAP8 (HAPLESS 8) (TAIR-AT5G56250.2); Has 259 Blast hits to 240 proteins in 69 species- Archae - 0; Bacteria - 13; Metazoa - 67; Fungi - 34; Plants - 31; Viruses - 0; Other Eukaryotes - 114 (source- NCBI BLink). (969 aa)    
Predicted Functional Partners:
Bra002835
AT5G56210 (E=3e-072) WIP2 | WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization (276 aa)
           
  0.607
Bra002833
AT5G56230 (E=1e-065) PRA1.G2 | PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) (185 aa)
           
  0.607
Bra014191
AT1G49475 (E=9e-048) | DNA binding / transcription factor (212 aa)
           
  0.604
Bra002834
AT5G56220 (E=0.0) | nucleoside-triphosphatase/ nucleotide binding (972 aa)
           
  0.581
Bra022374
AT3G18960 (E=5e-073) | transcriptional factor B3 family protein (214 aa)
           
  0.520
Bra014192
AT1G49480 (E=6e-082) RTV1 | RTV1 (related to vernalization1 1); DNA binding / transcription factor (213 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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