STRINGSTRING
Bra002835 protein (Brassica rapa) - STRING interaction network
"Bra002835" - AT5G56210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002835AT5G56210 (E=3e-072) WIP2 | WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization (276 aa)    
Predicted Functional Partners:
Bra009405
AT5G04990 (E=8e-193) | sad1/unc-84 protein-related (745 aa)
       
 
  0.753
Bra029862
AT3G10730 (E=4e-183) | sad1/unc-84-like 2 family protein (449 aa)
       
 
  0.713
Bra002833
AT5G56230 (E=1e-065) PRA1.G2 | PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) (185 aa)
           
  0.666
Bra008966
AT5G11390 (E=3e-138) | unknown protein (656 aa)
       
 
  0.625
Bra026780
AT1G15110 (E=1e-035) | phosphatidyl serine synthase family protein (155 aa)
       
      0.613
Bra026434
AT4G26455 (E=5e-135) WIP1 | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization (495 aa)
       
   
0.613
Bra002834
AT5G56220 (E=0.0) | nucleoside-triphosphatase/ nucleotide binding (972 aa)
           
  0.607
Bra002832
AT5G56240 (E=2e-279) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- HAP8 (HAPLESS 8) (TAIR-AT5G56250.2); Has 259 Blast hits to 240 proteins in 69 species- Archae - 0; Bacteria - 13; Metazoa - 67; Fungi - 34; Plants - 31; Viruses - 0; Other Eukaryotes - 114 (source- NCBI BLink). (969 aa)
           
  0.607
Bra036205
AT3G29760 (E=2e-069) | NLI interacting factor (NIF) family protein (318 aa)
           
  0.439
Bra035576
AT5G55520 (E=2e-151) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 8 growth stages; CONTAINS InterPro DOMAIN/s- Kinesin-related (InterPro-IPR010544); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G26660.1); Has 25541 Blast hits to 15818 proteins in 1005 species- Archae - 217; Bacteria - 1869; Metazoa - 14348; Fungi - 1769; Plants - 907; Viruses - 48; Other Eukaryotes - 6383 (source- NCBI BLink). (683 aa)
           
  0.439
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (21%) [HD]