STRINGSTRING
Bra002845 protein (Brassica rapa) - STRING interaction network
"Bra002845" - AT5G56130 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002845AT5G56130 (E=8e-170) | transducin family protein / WD-40 repeat family protein (321 aa)    
Predicted Functional Partners:
Bra028613
AT5G09860 (E=4e-305) | nuclear matrix protein-related (608 aa)
     
  0.996
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
       
  0.994
Bra039002
AT2G19430 (E=4e-188) | transducin family protein / WD-40 repeat family protein (358 aa)
   
  0.987
Bra032027
AT3G02950 (E=5e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Tho complex subunit 7 (InterPro-IPR018018), Tho complex subunit 7/Mft1p (InterPro-IPR008501); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G16790.1); Has 2049 Blast hits to 1787 proteins in 271 species- Archae - 31; Bacteria - 158; Metazoa - 1041; Fungi - 168; Plants - 75; Viruses - 26; Other Eukaryotes - 550 (source- NCBI [...] (236 aa)
     
  0.981
Bra033650
AT5G42920 (E=0.0) | unknown protein (812 aa)
     
  0.978
Bra020273
AT5G59950 (E=7e-067) | RNA and export factor-binding protein, putative (218 aa)
     
  0.976
Bra002519
AT5G59950 (E=7e-074) | RNA and export factor-binding protein, putative (238 aa)
     
  0.976
Bra040261
AT1G45233 (E=8e-174) | unknown protein (431 aa)
     
  0.974
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
     
  0.972
Bra004158
AT1G66260 (E=1e-061) | RNA and export factor-binding protein, putative (288 aa)
     
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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