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Bra002848 protein (Brassica rapa) - STRING interaction network
"Bra002848" - AT5G56090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002848AT5G56090 (E=5e-219) COX15 | COX15 (cytochrome c oxidase 15) (454 aa)    
Predicted Functional Partners:
Bra037646
AT2G44520 (E=3e-169) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (424 aa)
   
  0.988
Bra022259
AT3G17910 (E=3e-163) SURF1 | SURF1 (SURFEIT 1) (349 aa)
   
 
  0.970
Bra021283
AT3G17910 (E=3e-153) SURF1 | SURF1 (SURFEIT 1) (340 aa)
   
 
  0.970
Bra004842
AT2G44520 (E=4e-081) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (282 aa)
   
  0.950
Bra032603
AT1G02410 (E=2e-132) | cytochrome c oxidase assembly protein CtaG / Cox11 family (286 aa)
   
  0.930
Bra030501
AT1G02410 (E=3e-131) | cytochrome c oxidase assembly protein CtaG / Cox11 family (281 aa)
   
  0.930
Bra033325
AT1G02410 (E=3e-097) | cytochrome c oxidase assembly protein CtaG / Cox11 family (188 aa)
   
  0.919
Bra039089
AT3G27240 (E=8e-151) | cytochrome c1, putative (307 aa)
   
  0.909
Bra032991
AT3G27240 (E=1e-144) | cytochrome c1, putative (307 aa)
   
  0.909
Bra025544
AT5G40810 (E=6e-032) | cytochrome c1, putative (82 aa)
   
  0.909
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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