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Bra002850 protein (Brassica rapa) - STRING interaction network
"Bra002850" - AT3G42860 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra002850AT3G42860 (E=1e-071) | zinc knuckle (CCHC-type) family protein ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (280 aa)    
Predicted Functional Partners:
Bra038910
AT3G51620 (E=9e-294) | unknown protein (795 aa)
     
 
  0.770
Bra016988
AT2G40520 (E=2e-115) | nucleotidyltransferase family protein (452 aa)
     
 
  0.770
Bra014698
AT3G56320 (E=2e-183) | nucleotidyltransferase family protein (536 aa)
     
 
  0.770
Bra012846
AT3G51620 (E=1e-159) | unknown protein (604 aa)
     
 
  0.770
Bra007236
AT3G56320 (E=2e-196) | nucleotidyltransferase family protein (586 aa)
     
 
  0.770
Bra004576
AT2G40520 (E=3e-177) | nucleotidyltransferase family protein (500 aa)
     
 
  0.770
Bra003035
AT5G53770 (E=3e-222) | nucleotidyltransferase family protein (521 aa)
     
 
  0.770
Bra000561
AT4G00060 (E=0.0) MEE44 | MEE44 (maternal effect embryo arrest 44); nucleotidyltransferase (1455 aa)
     
 
  0.770
Bra035426
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (620 aa)
     
 
  0.762
Bra035425
AT1G59760 (E=1e-203) | ATP-dependent RNA helicase, putative (378 aa)
     
 
  0.762
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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