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Bra002851 protein (Brassica rapa) - STRING interaction network
"Bra002851" - AT5G56080 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002851AT5G56080 (E=4e-167) ATNAS2, NAS2 | NAS2 (NICOTIANAMINE SYNTHASE 2); nicotianamine synthase (320 aa)    
Predicted Functional Partners:
Bra040791
AT1G47240 (E=2e-254) NRAMP2, ATNRAMP2 | NRAMP2; inorganic anion transmembrane transporter/ metal ion transmembrane transporter (527 aa)
           
  0.491
Bra040711
AT1G47240 (E=6e-259) NRAMP2, ATNRAMP2 | NRAMP2; inorganic anion transmembrane transporter/ metal ion transmembrane transporter (532 aa)
           
  0.491
Bra012154
AT5G67330 (E=6e-269) ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (512 aa)
           
  0.491
Bra000573
AT2G23150 (E=3e-268) NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (511 aa)
           
  0.491
Bra011406
AT4G33020 (E=2e-145) ZIP9, ATZIP9 | ZIP9; cation transmembrane transporter/ metal ion transmembrane transporter (338 aa)
           
  0.477
Bra037329
AT1G01580 (E=2e-277) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (722 aa)
           
  0.447
Bra033252
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (700 aa)
           
  0.447
Bra032640
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (725 aa)
           
  0.447
Bra029389
AT5G23980 (E=0.0) ATFRO4, FRO4 | FRO4 (FERRIC REDUCTION OXIDASE 4); ferric-chelate reductase (698 aa)
           
  0.447
Bra001283
AT3G08040 (E=3e-196) FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter (529 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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