STRINGSTRING
Bra002865 protein (Brassica rapa) - STRING interaction network
"Bra002865" - AT5G55950 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002865AT5G55950 (E=7e-195) | transporter-related (398 aa)    
Predicted Functional Partners:
Bra040073
AT4G32272 (E=1e-171) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF250 (InterPro-IPR004853); BEST Arabidopsis thaliana protein match is- UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related (TAIR-AT4G31600.1); Has 1302 Blast hits to 1300 proteins in 174 species- Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 239; Plants - 567; Viruses - 0; Other Eukaryotes - 116 (source- NCBI BLink). (344 aa)
           
  0.473
Bra031568
AT1G07290 (E=2e-157) | nucleotide-sugar transmembrane transporter (362 aa)
           
  0.473
Bra027909
AT2G13650 (E=7e-163) GONST1 | GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter (329 aa)
           
  0.473
Bra023959
AT4G32272 (E=1e-161) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF250 (InterPro-IPR004853); BEST Arabidopsis thaliana protein match is- UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related (TAIR-AT4G31600.1); Has 1302 Blast hits to 1300 proteins in 174 species- Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 239; Plants - 567; Viruses - 0; Other Eukaryotes - 116 (source- NCBI BLink). (343 aa)
           
  0.473
Bra020078
AT5G19980 (E=2e-086) | integral membrane family protein (305 aa)
           
  0.473
Bra015761
AT1G76340 (E=2e-107) | integral membrane family protein (271 aa)
           
  0.473
Bra015571
AT1G07290 (E=3e-175) | nucleotide-sugar transmembrane transporter (378 aa)
           
  0.473
Bra012237
AT1G76340 (E=3e-142) | integral membrane family protein (346 aa)
           
  0.473
Bra010229
AT4G31600 (E=1e-106) | UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related (393 aa)
           
  0.473
Bra008249
AT1G76340 (E=1e-008) | integral membrane family protein (258 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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