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Bra002867 protein (Brassica rapa) - STRING interaction network
"Bra002867" - AT5G55920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002867AT5G55920 (E=1e-193) OLI2 | nucleolar protein, putative (659 aa)    
Predicted Functional Partners:
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.998
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
 
  0.998
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
 
  0.998
Bra012029
AT3G16840 (E=3e-022) | ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (158 aa)
   
 
  0.998
Bra021206
AT3G16840 (E=3e-020) | ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (155 aa)
     
 
  0.998
Bra021205
AT3G16840 (E=1e-263) | ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (629 aa)
     
 
  0.998
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
   
 
  0.998
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
   
 
  0.998
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
   
 
  0.998
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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