STRINGSTRING
Bra002868 protein (Brassica rapa) - STRING interaction network
"Bra002868" - AT5G55910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002868AT5G55910 (E=2e-236) D6PK | D6PK (D6 PROTEIN KINASE); kinase/ protein kinase (500 aa)    
Predicted Functional Partners:
Bra026669
AT2G01420 (E=7e-294) PIN4, ATPIN4 | PIN4 (PIN-FORMED 4); auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (797 aa)
       
 
  0.695
Bra012358
AT1G23080 (E=3e-310) PIN7 | PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (603 aa)
       
 
  0.695
Bra035648
AT5G57090 (E=2e-269) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (661 aa)
       
 
  0.642
Bra015983
AT1G73590 (E=1e-313) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (618 aa)
       
 
  0.642
Bra008105
AT1G73590 (E=0.0) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (616 aa)
       
 
  0.642
Bra006834
AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (642 aa)
       
 
  0.642
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
       
 
  0.547
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
       
 
  0.547
Bra022252
AT3G17850 (E=5e-070) | protein kinase, putative (216 aa)
       
 
  0.504
Bra009447
AT5G04510 (E=1e-247) PDK1, ATPDK1 | PDK1 (3’-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase (490 aa)
       
0.493
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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