STRINGSTRING
Bra002878 protein (Brassica rapa) - STRING interaction network
"Bra002878" - AT5G55730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002878AT5G55730 (E=4e-157) FLA1 | FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1) (426 aa)    
Predicted Functional Partners:
Bra034817
AT3G11700 (E=6e-207) FLA18 | FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) (456 aa)
     
   
  0.465
Bra033439
AT3G52370 (E=2e-178) FLA15 | FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) (436 aa)
     
   
  0.463
Bra017285
AT2G35860 (E=1e-202) FLA16 | FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) (443 aa)
     
   
  0.462
Bra026159
AT1G15190 (E=1e-069) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomembrane system; EXPRESSED IN- flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- FAS1 domain (InterPro-IPR000782); Has 49 Blast hits to 39 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (243 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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