STRINGSTRING
Bra002880 protein (Brassica rapa) - STRING interaction network
"Bra002880" - AT5G55660 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002880AT5G55660 (E=4e-161) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species- Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source- NCBI BLink). (865 aa)    
Predicted Functional Partners:
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
      0.648
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
      0.648
Bra035286
AT4G10710 (E=0.0) SPT16 | SPT16 (global transcription factor C) (963 aa)
     
      0.622
Bra000719
AT4G10710 (E=0.0) SPT16 | SPT16 (global transcription factor C) (1168 aa)
     
      0.622
Bra020856
AT4G22140 (E=5e-126) | DNA binding / protein binding / zinc ion binding (285 aa)
     
      0.621
Bra019395
AT4G22140 (E=7e-132) | DNA binding / protein binding / zinc ion binding (224 aa)
     
      0.621
Bra013592
AT4G22140 (E=9e-129) | DNA binding / protein binding / zinc ion binding (231 aa)
     
      0.621
Bra010705
AT4G39100 (E=4e-118) SHL1 | SHL1 (short life); transcription factor/ zinc-mediated transcriptional activator (336 aa)
     
      0.621
Bra040117
AT3G05040 (E=6e-212) HST, HST1 | HST (HASTY); nucleocytoplasmic transporter (1500 aa)
     
      0.590
Bra011842
AT4G39680 (E=7e-119) | SAP domain-containing protein (329 aa)
     
   
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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