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Bra002885 protein (Brassica rapa) - STRING interaction network
"Bra002885" - AT5G55630 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002885AT5G55630 (E=1e-152) KCO1, TPK1, ATKCO1, ATTPK1 | ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel (357 aa)    
Predicted Functional Partners:
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
         
  0.747
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
         
  0.747
Bra040770
AT1G32250 (E=7e-078) | calmodulin, putative (166 aa)
       
  0.725
Bra040379
AT3G07490 (E=1e-058) AGD11 | AGD11 (ARF-GAP domain 11); calcium ion binding (149 aa)
       
  0.725
Bra040169
AT4G17615 (E=8e-118) CBL1, ATCBL1, SCABP5 | CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding (213 aa)
       
  0.725
Bra039845
AT2G15680 (E=6e-082) | calmodulin-related protein, putative (189 aa)
       
  0.725
Bra039723
AT4G14640 (E=6e-072) CAM8 | CAM8 (CALMODULIN 8); calcium ion binding (153 aa)
       
  0.725
Bra039511
AT5G44460 (E=2e-075) | calcium-binding protein, putative (182 aa)
       
  0.725
Bra039271
AT2G46600 (E=2e-059) | calcium-binding protein, putative (133 aa)
       
  0.725
Bra039037
AT3G29000 (E=9e-041) | calcium-binding EF hand family protein (105 aa)
       
  0.725
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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