STRINGSTRING
Bra002889 protein (Brassica rapa) - STRING interaction network
"Bra002889" - AT5G55610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002889AT5G55610 (E=6e-112) | unknown protein (331 aa)    
Predicted Functional Partners:
Bra029791
AT3G09810 (E=8e-172) | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (389 aa)
     
   
  0.433
Bra006314
AT5G15640 (E=1e-163) | mitochondrial substrate carrier family protein (323 aa)
     
   
  0.421
Bra006538
AT5G20080 (E=2e-180) | NADH-cytochrome b5 reductase, putative (328 aa)
     
   
  0.420
Bra032812
AT1G24265 (E=2e-103) | unknown protein (410 aa)
           
  0.418
Bra029485
AT4G04180 (E=1e-285) | AAA-type ATPase family protein (585 aa)
           
  0.418
Bra026664
AT2G01460 (E=2e-186) | ATP binding / kinase (952 aa)
           
  0.418
Bra021067
AT4G17140 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Pleckstrin homology (InterPro-IPR001849); BEST Arabidopsis thaliana protein match is- phosphoinositide binding (TAIR-AT1G48090.2). (4196 aa)
           
  0.418
Bra010956
AT1G24267 (E=7e-129) | unknown protein (346 aa)
           
  0.418
Bra009118
AT5G05520 (E=2e-233) | outer membrane OMP85 family protein (527 aa)
           
  0.418
Bra025313
AT3G27930 (E=3e-193) | unknown protein (424 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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