STRINGSTRING
Bra002891 protein (Brassica rapa) - STRING interaction network
"Bra002891" - AT5G55590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002891AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)    
Predicted Functional Partners:
Bra029690
AT3G07970 (E=2e-208) QRT2 | QRT2 (QUARTET 2); polygalacturonase (406 aa)
       
  0.965
Bra024602
AT1G23460 (E=1e-213) | polygalacturonase (442 aa)
       
  0.953
Bra016912
AT2G41850 (E=2e-206) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (448 aa)
       
  0.953
Bra016911
AT2G41850 (E=3e-215) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (433 aa)
       
  0.953
Bra016345
AT1G23460 (E=6e-234) | polygalacturonase (468 aa)
       
  0.953
Bra016213
AT1G70500 (E=1e-225) | polygalacturonase, putative / pectinase, putative (467 aa)
       
  0.953
Bra012375
AT1G23460 (E=1e-203) | polygalacturonase (446 aa)
       
  0.953
Bra007332
AT3G57510 (E=1e-212) ADPG1 | ADPG1; polygalacturonase (432 aa)
       
  0.953
Bra004655
AT3G57510 (E=1e-152) ADPG1 | ADPG1; polygalacturonase (428 aa)
       
  0.953
Bra003286
AT3G57510 (E=9e-210) ADPG1 | ADPG1; polygalacturonase (433 aa)
       
  0.953
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]