STRINGSTRING
Bra002897 protein (Brassica rapa) - STRING interaction network
"Bra002897" - AT5G55560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002897AT5G55560 (E=6e-143) | protein kinase family protein (307 aa)    
Predicted Functional Partners:
Bra006265
AT5G14720 (E=5e-069) | protein kinase family protein (192 aa)
   
 
 
  0.779
Bra003600
AT1G70430 (E=3e-117) | protein kinase family protein (636 aa)
       
 
  0.731
Bra039858
AT4G14480 (E=7e-206) | protein kinase family protein (483 aa)
   
 
 
0.608
Bra016220
AT1G70430 (E=2e-235) | protein kinase family protein (592 aa)
   
 
 
0.603
Bra013762
AT4G24100 (E=0.0) | protein kinase family protein (682 aa)
       
 
0.584
Bra035282
AT4G10730 (E=6e-160) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (592 aa)
       
 
0.582
Bra023483
AT5G14720 (E=1e-168) | protein kinase family protein (630 aa)
       
 
0.582
Bra008742
AT5G14720 (E=8e-183) | protein kinase family protein (627 aa)
       
 
0.582
Bra033169
AT4G24100 (E=2e-252) | protein kinase family protein (659 aa)
       
 
0.581
Bra035132
AT1G79640 (E=1e-289) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (594 aa)
       
 
0.581
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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