STRINGSTRING
Bra002899 protein (Brassica rapa) - STRING interaction network
"Bra002899" - AT5G55530 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002899AT5G55530 (E=3e-176) | C2 domain-containing protein (396 aa)    
Predicted Functional Partners:
Bra019939
AT1G10380 (E=5e-157) | unknown protein (306 aa)
           
  0.666
Bra020274
AT5G59920 (E=3e-203) ULI3 | ULI3; diacylglycerol binding / heme binding (626 aa)
           
  0.495
Bra039865
AT1G30580 (E=3e-193) | GTP binding ; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (394 aa)
           
  0.483
Bra026474
AT5G23950 (E=8e-061) | C2 domain-containing protein (259 aa)
           
  0.426
Bra001103
AT3G04360 (E=1e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 9 plant structures; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- C2 domain-containing prot [...] (397 aa)
           
  0.426
Bra026227
AT1G30580 (E=2e-186) | GTP binding ; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (644 aa)
           
  0.420
ST5b-1
AT1G74090 (E=6e-168) SOT18, ATSOT18, ATST5B | SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulfotransferase/ 4-methylthiobutyl-desulfoglucosinolate sulfotransferase/ 5-methylthiopentyl-desulfoglucosinolate sulfotransferase/ 7-methylthioheptyl-desulfogluco (344 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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