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Bra002903 protein (Brassica rapa) - STRING interaction network
"Bra002903" - AT5G55490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002903AT5G55490 (E=4e-238) ATGEX1, GEX1 | GEX1 (GAMETE EXPRESSED PROTEIN 1) (591 aa)    
Predicted Functional Partners:
Bra020660
AT5G49150 (E=1e-161) ATGEX2, GEX2 | GEX2 (GAMETE EXPRESSED 2) (1121 aa)
           
  0.499
Bra003413
AT3G60460 (E=9e-119) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor (291 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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