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Bra002905 protein (Brassica rapa) - STRING interaction network
"Bra002905" - AT5G55470 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002905AT5G55470 (E=3e-264) ATNHX3, NHX3 | ATNHX3; sodium ion transmembrane transporter/ sodium-hydrogen antiporter (533 aa)    
Predicted Functional Partners:
Bra020367
AT5G58460 (E=0.0) ATCHX25, CHX25 | ATCHX25; monovalent cation-proton antiporter/ sodium-hydrogen antiporter (921 aa)
   
 
  0.829
Bra033232
AT4G00630 (E=0.0) KEA2, ATKEA2 | KEA2; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1118 aa)
     
 
  0.809
Bra033231
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1120 aa)
     
 
  0.809
Bra032651
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1157 aa)
     
 
  0.809
Bra032572
AT1G01790 (E=2e-179) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (771 aa)
     
 
  0.809
Bra029519
AT4G04850 (E=1e-247) KEA3, ATKEA3 | KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (819 aa)
     
 
  0.809
Bra019099
AT4G26570 (E=8e-113) ATCBL3, CBL3 | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (449 aa)
     
  0.785
Bra040169
AT4G17615 (E=8e-118) CBL1, ATCBL1, SCABP5 | CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding (213 aa)
     
  0.763
Bra037030
AT4G33000 (E=3e-114) CBL10, ATCBL10 | CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding (258 aa)
     
  0.763
Bra035598
AT5G55990 (E=5e-126) CBL2, ATCBL2 | CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding (226 aa)
     
  0.763
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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