STRINGSTRING
Bra002914 protein (Brassica rapa) - STRING interaction network
"Bra002914" - AT5G55450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002914AT5G55450 (E=7e-025) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (102 aa)    
Predicted Functional Partners:
Bra003784
AT1G74820 (E=8e-085) | cupin family protein (219 aa)
           
  0.476
Bra000287
AT4G12530 (E=3e-036) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (116 aa)
           
  0.471
Bra023967
AT4G32020 (E=8e-054) | unknown protein (181 aa)
           
  0.406
Bra011315
AT4G32020 (E=6e-033) | unknown protein (203 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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