STRINGSTRING
Bra002917 protein (Brassica rapa) - STRING interaction network
"Bra002917" - AT5G55310 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002917AT5G55310 (E=0.0) TOP1BETA, TOP1 | TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I (906 aa)    
Predicted Functional Partners:
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
 
  0.989
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
 
  0.989
Bra029828
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (998 aa)
     
 
  0.953
Bra028796
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (997 aa)
     
 
  0.952
Bra009485
AT5G04110 (E=1e-091) | DNA topoisomerase II family protein (512 aa)
     
 
  0.952
Bra005795
AT5G04130 (E=2e-114) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (799 aa)
     
 
  0.952
Bra005794
AT5G04110 (E=1e-077) | DNA topoisomerase II family protein (507 aa)
     
 
  0.952
Bra001374
AT3G10690 (E=4e-296) | DNA gyrase subunit A family protein (896 aa)
     
 
  0.951
Bra006287
AT5G15170 (E=0.0) | tyrosyl-DNA phosphodiesterase-related (612 aa)
       
 
  0.944
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
      0.921
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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