STRINGSTRING
Bra002918 protein (Brassica rapa) - STRING interaction network
"Bra002918" - AT5G55280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002918AT5G55280 (E=5e-168) FTSZ1-1, ATFTSZ1-1, CPFTSZ | FTSZ1-1; protein binding / structural molecule (411 aa)    
Predicted Functional Partners:
Bra033637
AT5G42480 (E=0.0) ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding (783 aa)
     
 
  0.966
Bra009723
AT5G24020 (E=2e-095) MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization (174 aa)
     
 
  0.964
Bra017252
AT2G36250 (E=2e-208) FTSZ2-1, ATFTSZ2-1 | FTSZ2-1; protein binding / structural molecule (477 aa)
   
 
0.896
Bra029073
AT5G53350 (E=3e-169) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (526 aa)
     
 
  0.794
Bra027997
AT1G33360 (E=8e-236) | ATP-dependent Clp protease ATP-binding subunit ClpX, putative (616 aa)
     
 
  0.794
Bra003063
AT5G53350 (E=2e-218) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (558 aa)
     
 
  0.794
Bra003041
AT5G49840 (E=4e-213) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (605 aa)
     
 
  0.794
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
   
 
  0.791
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
   
 
  0.791
Bra015875
AT1G75010 (E=0.0) ARC3 | ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3) (739 aa)
     
 
  0.787
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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