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Bra002919 protein (Brassica rapa) - STRING interaction network
"Bra002919" - AT5G55250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002919AT5G55250 (E=2e-214) IAMT1 | IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1); S-adenosylmethionine-dependent methyltransferase/ indole acetic acid carboxyl methyltransferase (386 aa)    
Predicted Functional Partners:
Bra039120
AT3G01420 (E=0.0) ALPHA-DOX1, DOX1, DIOX1 | DOX1; lipoxygenase (640 aa)
   
          0.445
Bra008107
AT1G73680 (E=0.0) | pathogen-responsive alpha-dioxygenase, putative (631 aa)
   
          0.444
Bra015975
AT1G73680 (E=0.0) | pathogen-responsive alpha-dioxygenase, putative (631 aa)
   
          0.442
Bra003833
AT1G73680 (E=0.0) | pathogen-responsive alpha-dioxygenase, putative (631 aa)
   
          0.442
Bra023158
AT1G61660 (E=1e-023) | basic helix-loop-helix (bHLH) family protein (142 aa)
           
  0.422
Bra035186
AT1G80370 (E=5e-160) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator (462 aa)
           
  0.420
Bra032202
AT1G44110 (E=5e-175) CYCA1;1 | CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator (422 aa)
           
  0.420
Bra031463
AT1G80370 (E=2e-136) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator (369 aa)
           
  0.420
Bra026120
AT1G15570 (E=8e-196) CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator (466 aa)
           
  0.420
Bra023606
AT1G44110 (E=5e-147) CYCA1;1 | CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator (419 aa)
           
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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