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Bra002927 protein (Brassica rapa) - STRING interaction network
"Bra002927" - AT5G55180 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002927AT5G55180 (E=5e-213) | glycosyl hydrolase family 17 protein (463 aa)    
Predicted Functional Partners:
Bra030387
AT1G52380 (E=1e-141) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (428 aa)
       
      0.901
Bra018966
AT1G52380 (E=7e-110) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (397 aa)
       
      0.614
Bra005536
AT2G32990 (E=9e-273) AtGH9B8 | AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (522 aa)
           
  0.534
Bra017024
AT2G40200 (E=9e-091) | basic helix-loop-helix (bHLH) family protein (253 aa)
           
  0.533
Bra034864
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1488 aa)
           
  0.480
Bra034166
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1448 aa)
           
  0.480
Bra029698
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1479 aa)
           
  0.480
Bra001391
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1452 aa)
           
  0.480
Bra001286
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1484 aa)
           
  0.480
Bra000177
AT2G40200 (E=1e-081) | basic helix-loop-helix (bHLH) family protein (233 aa)
           
  0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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