STRINGSTRING
Bra002932 protein (Brassica rapa) - STRING interaction network
"Bra002932" - AT5G55110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002932AT5G55110 (E=2e-069) | stigma-specific Stig1 family protein (161 aa)    
Predicted Functional Partners:
Bra037445
AT5G48960 (E=6e-311) | 5’ nucleotidase family protein (570 aa)
   
          0.500
Bra020668
AT5G48960 (E=3e-314) | 5’ nucleotidase family protein (614 aa)
   
          0.500
Bra003762
AT1G75210 (E=6e-286) | 5’ nucleotidase family protein (540 aa)
   
          0.467
Bra015859
AT1G75210 (E=3e-291) | 5’ nucleotidase family protein (539 aa)
   
          0.465
Bra003763
AT1G75210 (E=2e-081) | 5’ nucleotidase family protein (283 aa)
   
          0.428
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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