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Bra002934 protein (Brassica rapa) - STRING interaction network
"Bra002934" - AT5G55070 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002934AT5G55070 (E=7e-198) | 2-oxoacid dehydrogenase family protein (466 aa)    
Predicted Functional Partners:
Bra018700
AT1G48030 (E=2e-269) mtLPD1 | mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase (507 aa)
 
  0.999
Bra022204
AT3G17240 (E=2e-248) mtLPD2 | mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase (504 aa)
 
  0.999
Bra027582
AT3G55410 (E=0.0) | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (1019 aa)
 
  0.999
Bra003211
AT3G55410 (E=0.0) | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (1016 aa)
 
  0.999
Bra024417
AT5G65750 (E=0.0) | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (1014 aa)
 
  0.999
Bra033540
AT4G16155 (E=4e-278) | dihydrolipoyl dehydrogenase (563 aa)
   
  0.999
Bra001645
AT3G16950 (E=4e-292) LPD1, ptlpd1 | LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase (618 aa)
   
  0.999
Bra012738
AT4G16155 (E=3e-034) | dihydrolipoyl dehydrogenase (208 aa)
   
  0.995
Bra036142
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (729 aa)
   
  0.987
Bra020639
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (608 aa)
   
  0.987
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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