STRINGSTRING
Bra002935 protein (Brassica rapa) - STRING interaction network
"Bra002935" - AT5G55060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002935AT5G55060 (E=1e-288) | unknown protein (676 aa)    
Predicted Functional Partners:
Bra027294
AT3G14910 (E=1e-247) | unknown protein (937 aa)
     
  0.810
Bra028830
AT5G03530 (E=8e-100) ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (212 aa)
     
 
  0.608
Bra009524
AT5G03530 (E=9e-104) ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (210 aa)
     
 
  0.608
Bra036934
AT1G43890 (E=1e-107) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (212 aa)
     
 
  0.554
Bra034924
AT1G43890 (E=1e-106) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (212 aa)
     
 
  0.554
Bra032196
AT1G43890 (E=2e-109) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (213 aa)
     
 
  0.554
Bra029804
AT3G09910 (E=6e-097) ATRAB18C, ATRABC2B | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding (204 aa)
     
 
  0.554
Bra038535
AT2G22290 (E=2e-093) ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6 | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (207 aa)
     
 
    0.531
Bra037802
AT5G64990 (E=3e-080) AtRABH1a | AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding (197 aa)
     
 
    0.531
Bra037641
AT2G44610 (E=2e-101) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
    0.531
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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