STRINGSTRING
Bra002937 protein (Brassica rapa) - STRING interaction network
"Bra002937" - AT5G55050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002937AT5G55050 (E=5e-190) | GDSL-motif lipase/hydrolase family protein (377 aa)    
Predicted Functional Partners:
Bra023631
AT5G17680 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1437 aa)
     
 
  0.418
Bra023349
AT5G11940 (E=0.0) | subtilase family protein (760 aa)
           
  0.410
Bra028894
AT5G01280 (E=1e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- sperm cell, male gametophyte; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 40332 Blast hits to 19265 proteins in 905 species- Archae - 97; Bacteria - 3595; Metazoa - 17370; Fungi - 8276; Plants - 837; Viruses - 1209; Other Eukaryotes - 8948 (source- NCBI BLink). (506 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]