STRINGSTRING
Bra002940 protein (Brassica rapa) - STRING interaction network
"Bra002940" - AT5G54980 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
Bra002940AT5G54980 (E=1e-082) | integral membrane family protein (192 aa)    
Predicted Functional Partners:
Bra033640
AT5G42620 (E=0.0) | metalloendopeptidase/ zinc ion binding (832 aa)
           
  0.579
Bra005086
AT2G38770 (E=0.0) EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765) (1501 aa)
           
  0.471
Bra024325
AT5G64750 (E=3e-112) ABR1 | ABR1 (ABA REPRESSOR1); DNA binding / transcription factor (395 aa)
           
  0.469
Bra035513
AT1G32170 (E=1e-165) XTR4, XTH30 | XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan-xyloglucosyl transferase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (342 aa)
           
  0.448
Bra013367
AT4G18990 (E=3e-173) | xyloglucan-xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (351 aa)
           
  0.448
Bra012559
AT4G18990 (E=5e-176) | xyloglucan-xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (347 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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