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Bra002942 protein (Brassica rapa) - STRING interaction network
"Bra002942" - AT5G54960 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002942AT5G54960 (E=0.0) PDC2 | PDC2 (pyruvate decarboxylase-2); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding (607 aa)    
Predicted Functional Partners:
Bra027452
AT5G42740 (E=6e-182) | glucose-6-phosphate isomerase, cytosolic (PGIC) (542 aa)
   
  0.973
Bra019214
AT4G24620 (E=0.0) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (613 aa)
   
  0.973
Bra013819
AT4G24620 (E=1e-314) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (616 aa)
   
  0.973
Bra015693
AT1G77120 (E=1e-200) ADH1, ADH, ATADH, ATADH1 | ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (379 aa)
     
 
  0.959
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
     
  0.944
Bra022618
AT5G52920 (E=5e-198) PKP1, PKP-BETA1, PKP2 | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (606 aa)
     
 
  0.941
Bra038654
AT5G63680 (E=4e-282) | pyruvate kinase, putative (510 aa)
     
 
  0.941
Bra037750
AT5G63680 (E=5e-277) | pyruvate kinase, putative (510 aa)
     
 
  0.941
Bra028545
AT3G52990 (E=1e-294) | pyruvate kinase, putative (527 aa)
     
 
  0.941
Bra023780
AT3G22960 (E=1e-274) PKP1, PKP-ALPHA | PKP-ALPHA; pyruvate kinase (577 aa)
     
 
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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