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Bra002946 protein (Brassica rapa) - STRING interaction network
"Bra002946" - AT5G54910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002946AT5G54910 (E=6e-292) | DEAD/DEAH box helicase, putative (744 aa)    
Predicted Functional Partners:
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
   
  0.975
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
   
  0.975
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
  0.963
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.953
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.935
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.915
Bra033217
AT1G02140 (E=6e-050) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (102 aa)
     
  0.891
Bra032668
AT1G02140 (E=4e-066) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (266 aa)
     
  0.891
Bra036994
AT3G23070 (E=4e-074) | RNA binding (741 aa)
     
  0.853
Bra036641
AT3G16810 (E=3e-022) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (118 aa)
     
      0.840
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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