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Bra002949 protein (Brassica rapa) - STRING interaction network
"Bra002949" - AT5G54860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002949AT5G54860 (E=2e-217) | integral membrane transporter family protein (493 aa)    
Predicted Functional Partners:
Bra003499
AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding (129 aa)
   
          0.515
Bra004459
AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)
   
          0.512
Bra034190
AT4G03150 (E=2e-067) | unknown protein (178 aa)
   
          0.510
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
          0.507
Bra026490
AT5G23575 (E=5e-309) | transmembrane protein, putative (596 aa)
           
  0.504
Bra009696
AT5G23575 (E=5e-308) | transmembrane protein, putative (597 aa)
           
  0.504
Bra007678
AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding (130 aa)
   
          0.504
Bra000451
AT2G47400 (E=1e-059) CP12-1, CP12 | CP12-1 (126 aa)
   
          0.504
Bra021396
AT2G47400 (E=6e-049) CP12-1, CP12 | CP12-1 (124 aa)
   
          0.493
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
          0.492
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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