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Bra002954 protein (Brassica rapa) - STRING interaction network
"Bra002954" - AT5G54810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002954AT5G54810 (E=1e-250) TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase (465 aa)    
Predicted Functional Partners:
Bra007085
AT3G54640 (E=3e-143) TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase (311 aa)
 
  0.999
Bra036254
AT4G02610 (E=2e-138) | tryptophan synthase, alpha subunit, putative (276 aa)
 
  0.999
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
     
 
  0.995
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
     
 
  0.994
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
     
 
  0.994
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
     
 
  0.994
Bra037502
AT5G48220 (E=1e-183) | indole-3-glycerol phosphate synthase, putative (382 aa)
 
 
  0.990
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
   
 
  0.976
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
   
 
  0.976
Bra013209
AT2G04400 (E=1e-188) | indole-3-glycerol phosphate synthase (IGPS) (402 aa)
 
 
  0.955
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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