STRINGSTRING
Bra002957 protein (Brassica rapa) - STRING interaction network
"Bra002957" - AT5G54770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002957AT5G54770 (E=8e-176) THI1, TZ, THI4 | THI1; protein homodimerization (352 aa)    
Predicted Functional Partners:
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
   
   
  0.771
Bra018372
AT2G29630 (E=0.0) THIC | THIC (ThiaminC); ADP-ribose pyrophosphohydrolase/ catalytic/ iron-sulfur cluster binding (646 aa)
   
   
  0.754
Bra008393
AT1G79050 (E=7e-212) | DNA repair protein recA (435 aa)
         
  0.670
Bra003623
AT1G79050 (E=1e-214) | DNA repair protein recA (430 aa)
         
  0.670
Bra029488
AT4G04330 (E=1e-078) | unknown protein (174 aa)
     
      0.642
Bra020067
AT5G19855 (E=2e-090) | unknown protein (258 aa)
     
      0.620
Bra006522
AT5G19855 (E=1e-093) | unknown protein (204 aa)
     
      0.620
Bra002265
AT5G19855 (E=1e-049) | unknown protein (216 aa)
     
      0.582
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
         
  0.486
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
         
  0.486
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]