STRINGSTRING
Bra002960 protein (Brassica rapa) - STRING interaction network
"Bra002960" - AT5G54730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002960AT5G54730 (E=5e-224) ATATG18F, ATG18F | AtATG18f (741 aa)    
Predicted Functional Partners:
Bra036835
AT3G51130 (E=1e-217) | unknown protein (692 aa)
     
      0.639
Bra012867
AT3G51130 (E=4e-218) | unknown protein (652 aa)
     
      0.639
Bra024070
AT4G30510 (E=4e-161) ATATG18B, ATG18B | AtATG18b (366 aa)
     
 
  0.636
Bra005844
AT5G05150 (E=1e-153) ATATG18E, ATG18E | AtATG18e (377 aa)
     
 
  0.561
Bra037564
AT3G18770 (E=1e-213) | LOCATED IN- chloroplast; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species- Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source- NCBI BLink). (590 aa)
     
   
  0.558
Bra034377
AT2G27920 (E=9e-211) SCPL51 | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51); serine-type carboxypeptidase (458 aa)
           
  0.540
Bra016968
AT2G40810 (E=2e-181) ATATG18C | AtATG18c (408 aa)
     
   
  0.503
Bra014393
AT3G62770 (E=8e-179) AtATG18a | AtATG18a (409 aa)
     
   
  0.503
Bra014522
AT3G59950 (E=8e-184) | autophagy 4b (APG4b) (419 aa)
     
   
  0.501
Bra004808
AT2G44140 (E=4e-186) | autophagy 4a (APG4a) (466 aa)
     
   
  0.482
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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