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Bra002966 protein (Brassica rapa) - STRING interaction network
"Bra002966" - AT5G54660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002966AT5G54660 (E=8e-093) | heat shock protein-related (192 aa)    
Predicted Functional Partners:
Bra013566
AT4G21870 (E=8e-052) | 26.5 kDa class P-related heat shock protein (HSP26.5-P) (138 aa)
           
  0.607
Bra024977
AT5G47600 (E=3e-037) | heat shock protein-related (147 aa)
           
  0.604
Bra024931
AT5G47600 (E=4e-040) | heat shock protein-related (149 aa)
           
  0.604
Bra029174
AT5G51440 (E=3e-066) | 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) (197 aa)
           
  0.499
Bra013872
AT4G25200 (E=1e-072) ATHSP23.6-MITO | ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) (213 aa)
           
  0.441
Bra018972
AT1G52560 (E=7e-067) | 26.5 kDa class I small heat shock protein-like (HSP26.5-P) (191 aa)
           
  0.428
Bra030910
AT1G54050 (E=3e-067) | 17.4 kDa class III heat shock protein (HSP17.4-CIII) (154 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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