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Bra002973 protein (Brassica rapa) - STRING interaction network
"Bra002973" - AT5G54600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002973AT5G54600 (E=4e-090) | 50S ribosomal protein L24, chloroplast (CL24) (199 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
   
  0.999
Bra029257
AT1G52370 (E=2e-111) | ribosomal protein L22 family protein (289 aa)
   
  0.999
Bra010087
AT4G28360 (E=5e-106) | ribosomal protein L22 family protein (272 aa)
   
  0.999
Bra014131
AT1G48350 (E=2e-087) | ribosomal protein L18 family protein (171 aa)
   
  0.999
Bra040982
ATCG00830 (E=9e-059) RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex (165 aa)
   
  0.999
Bra004801
AT2G44065 (E=2e-077) | ribosomal protein L2 family protein (214 aa)
   
  0.999
Bra031109
AT2G20060 (E=1e-135) | ribosomal protein L4 family protein (514 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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