STRINGSTRING
Bra002991 protein (Brassica rapa) - STRING interaction network
"Bra002991" - AT5G54440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002991AT5G54440 (E=0.0) | unknown protein (1257 aa)    
Predicted Functional Partners:
Bra039473
AT3G05000 (E=1e-095) | transport protein particle (TRAPP) component Bet3 family protein (173 aa)
       
  0.978
Bra027464
AT5G54750 (E=4e-102) | transport protein particle (TRAPP) component Bet3, putative (186 aa)
       
  0.977
Bra009600
AT5G02280 (E=4e-079) | synbindin, putative (141 aa)
       
  0.974
Bra005715
AT5G02280 (E=8e-068) | synbindin, putative (214 aa)
       
  0.974
Bra035176
AT1G80500 (E=3e-038) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport, ER to Golgi vesicle-mediated transport; LOCATED IN- intracellular; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Sedlin (InterPro-IPR006722), Longin-like (InterPro-IPR011012); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G20930.1); Has 437 Blast hits to 435 proteins in 138 species- Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 75; Plants - 53; Viruses - 0; Other Eukaryotes - 61 (source- NCBI BLink). (84 aa)
       
  0.974
Bra027566
AT1G80500 (E=7e-036) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport, ER to Golgi vesicle-mediated transport; LOCATED IN- intracellular; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Sedlin (InterPro-IPR006722), Longin-like (InterPro-IPR011012); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G20930.1); Has 437 Blast hits to 435 proteins in 138 species- Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 75; Plants - 53; Viruses - 0; Other Eukaryotes - 61 (source- NCBI BLink). (148 aa)
       
  0.974
Bra020396
AT5G58030 (E=5e-100) | transport protein particle (TRAPP) component Bet3 family protein (215 aa)
       
  0.974
Bra006787
AT5G58030 (E=7e-102) | transport protein particle (TRAPP) component Bet3 family protein (225 aa)
       
  0.974
Bra018897
AT1G51160 (E=2e-096) | synbindin, putative (169 aa)
       
  0.974
Bra014279
AT1G51160 (E=2e-095) | synbindin, putative (169 aa)
       
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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