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Bra002998 protein (Brassica rapa) - STRING interaction network
"Bra002998" - AT5G54280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002998AT5G54280 (E=0.0) ATM2, ATMYOS1, ATM4 | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2); motor (1205 aa)    
Predicted Functional Partners:
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
  0.950
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
       
  0.842
Bra037560
AT3G18780 (E=2e-178) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton (353 aa)
       
  0.839
Bra035607
AT5G56180 (E=2e-224) ATARP8, ARP8 | ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton (466 aa)
       
  0.839
Bra034778
AT3G12110 (E=5e-219) ACT11 | ACT11 (actin-11); structural constituent of cytoskeleton (377 aa)
       
  0.839
Bra033819
AT3G46520 (E=3e-218) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (377 aa)
       
  0.839
Bra030818
AT3G33520 (E=1e-099) ATARP6, ARP6, SUF3, ESD1 | ATARP6; structural constituent of cytoskeleton (222 aa)
       
  0.839
Bra030457
AT2G37620 (E=2e-033) ACT1, AAc1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton (103 aa)
       
  0.839
Bra028615
AT5G09810 (E=2e-218) ACT2, ACT7 | ACT7 (ACTIN 7); structural constituent of cytoskeleton (377 aa)
       
  0.839
Bra022356
AT3G18780 (E=2e-097) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton (323 aa)
       
  0.839
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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