STRINGSTRING
Bra002999 protein (Brassica rapa) - STRING interaction network
"Bra002999" - AT5G54270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002999AT5G54270 (E=1e-151) LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule (265 aa)    
Predicted Functional Partners:
Bra018144
AT3G47470 (E=2e-131) LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (252 aa)
     
   
0.756
Bra026745
AT1G15820 (E=3e-134) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding (259 aa)
     
   
0.716
Bra026099
AT1G15820 (E=8e-124) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding (258 aa)
     
   
0.716
Bra016650
AT1G15820 (E=1e-125) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding (257 aa)
     
   
0.712
Bra010774
AT1G30380 (E=2e-057) PSAK | PSAK (photosystem I subunit K) (130 aa)
     
   
  0.707
Bra007109
AT3G54890 (E=1e-133) LHCA1 | LHCA1; chlorophyll binding (241 aa)
     
   
0.705
Bra003198
AT3G54890 (E=5e-135) LHCA1 | LHCA1; chlorophyll binding (241 aa)
     
   
0.705
Bra000708
AT4G10340 (E=1e-133) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (280 aa)
     
   
0.664
Bra037913
AT4G10340 (E=2e-136) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (281 aa)
     
   
0.659
Bra014024
AT1G44575 (E=3e-109) NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding (265 aa)
     
   
  0.645
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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