STRINGSTRING
Bra003000 protein (Brassica rapa) - STRING interaction network
"Bra003000" - AT5G54260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003000AT5G54260 (E=0.0) MRE11, ATMRE11 | MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase (709 aa)    
Predicted Functional Partners:
Bra022873
AT2G31970 (E=0.0) RAD50, ATRAD50 | RAD50; ATP binding / nuclease/ zinc ion binding (1282 aa)
   
  0.998
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
     
  0.995
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
     
  0.985
Bra030327
AT5G40820 (E=0.0) ATRAD3, ATR, ATATR | ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (3589 aa)
     
  0.981
Bra009908
AT5G26680 (E=9e-202) | endonuclease, putative ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- [...] (363 aa)
   
  0.981
Bra014100
AT1G48050 (E=0.0) KU80, ATKU80 | KU80; double-stranded DNA binding / protein binding ; Single-stranded DNA-dependent ATP-dependent helicase (682 aa)
     
  0.980
Bra032653
AT1G01880 (E=2e-205) | DNA repair protein, putative (603 aa)
   
  0.978
Bra029924
AT3G48900 (E=4e-251) | DNA binding / catalytic/ chromatin binding / nuclease (622 aa)
   
  0.978
Bra019530
AT3G48190 (E=0.0) ATM, ATATM | ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (2957 aa)
     
  0.974
Bra037184
AT5G66130 (E=2e-125) ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) (566 aa)
     
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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