STRINGSTRING
Bra003002 protein (Brassica rapa) - STRING interaction network
"Bra003002" - AT5G54240 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003002AT5G54240 (E=1e-128) | unknown protein (280 aa)    
Predicted Functional Partners:
Bra019845
AT2G05710 (E=0.0) | aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (991 aa)
         
  0.438
Bra015165
AT2G05710 (E=9e-148) | aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative (1016 aa)
         
  0.438
Bra011642
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
         
  0.438
Bra010508
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
         
  0.438
Bra010419
AT4G26970 (E=0.0) | aconitate hydratase/ copper ion binding ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (995 aa)
         
  0.438
Bra002944
AT5G54940 (E=9e-055) | eukaryotic translation initiation factor SUI1, putative (232 aa)
         
  0.438
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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