STRINGSTRING
Bra003005 protein (Brassica rapa) - STRING interaction network
"Bra003005" - AT5G54180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003005AT5G54180 (E=3e-237) PTAC15 | PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15) (499 aa)    
Predicted Functional Partners:
Bra032727
AT4G13670 (E=1e-103) PTAC5 | PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); heat shock protein binding / unfolded protein binding (378 aa)
       
 
  0.558
Bra030522
AT1G03160 (E=0.0) FZL | FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase (909 aa)
     
 
  0.549
Bra015889
AT1G74850 (E=0.0) PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) (864 aa)
     
 
  0.488
Bra022458
AT3G19810 (E=1e-146) | unknown protein (327 aa)
     
   
  0.486
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
     
   
  0.423
Bra036231
AT4G05230 (E=1e-013) | ubiquitin family protein (444 aa)
         
  0.415
Bra036230
AT4G03370 (E=5e-016) | ubiquitin family protein (538 aa)
         
  0.415
Bra040142
AT3G04260 (E=0.0) PTAC3 | PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding (905 aa)
     
   
  0.415
Bra020935
AT4G20130 (E=1e-188) PTAC14 | PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) (664 aa)
     
   
  0.413
Bra029899
AT3G48500 (E=0.0) PDE312, PTAC10 | RNA binding (674 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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