STRINGSTRING
Bra003007 protein (Brassica rapa) - STRING interaction network
"Bra003007" - AT5G54160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003007AT5G54160 (E=4e-193) ATOMT1, OMT1 | ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3’-O-methyltransferase/ quercetin 3-O-methyltransferase (364 aa)    
Predicted Functional Partners:
Bra022425
AT3G19450 (E=1e-167) CAD4, ATCAD4, CAD, CAD-C | ATCAD4; cinnamyl-alcohol dehydrogenase (365 aa)
     
 
  0.947
Bra017639
AT4G34230 (E=8e-163) CAD5, ATCAD5, CAD-5 | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase (357 aa)
     
 
  0.947
Bra011510
AT4G34230 (E=2e-159) CAD5, ATCAD5, CAD-5 | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase (357 aa)
     
 
  0.947
Bra026737
AT1G15950 (E=3e-170) CCR1, IRX4, ATCCR1 | CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase (343 aa)
   
  0.939
Bra026090
AT1G15950 (E=3e-171) CCR1, IRX4, ATCCR1 | CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase (341 aa)
   
  0.939
Bra017752
AT4G36220 (E=8e-256) FAH1, CYP84A1 | FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase (519 aa)
     
 
  0.938
Bra030429
AT1G51680 (E=7e-274) 4CL1, 4CL.1, AT4CL1 | 4CL1 (4-COUMARATE-COA LIGASE 1); 4-coumarate-CoA ligase (552 aa)
     
 
  0.937
Bra031266
AT3G21240 (E=7e-274) 4CL2, AT4CL2 | 4CL2 (4-COUMARATE-COA LIGASE 2); 4-coumarate-CoA ligase (552 aa)
     
 
  0.936
Bra016041
AT1G72680 (E=2e-179) ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase, putative (354 aa)
         
  0.903
Bra033613
AT4G39330 (E=2e-176) ATCAD9, CAD9 | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9); binding / catalytic/ oxidoreductase/ zinc ion binding (360 aa)
         
  0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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