STRINGSTRING
Bra003012 protein (Brassica rapa) - STRING interaction network
"Bra003012" - AT5G54140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003012AT5G54140 (E=1e-189) ILL3 | ILL3; IAA-amino acid conjugate hydrolase/ metallopeptidase (428 aa)    
Predicted Functional Partners:
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
   
   
  0.615
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
   
   
  0.615
Bra007013
AT3G53580 (E=4e-170) | diaminopimelate epimerase family protein (365 aa)
   
 
  0.556
Bra005198
AT3G53580 (E=8e-166) | diaminopimelate epimerase family protein (359 aa)
   
 
  0.556
Bra003147
AT3G53580 (E=2e-168) | diaminopimelate epimerase family protein (366 aa)
   
 
  0.556
Bra026698
AT1G16920 (E=9e-118) RAB11, ATRABA1B | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding (216 aa)
           
  0.506
Bra026016
AT1G16920 (E=2e-118) RAB11, ATRABA1B | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding (216 aa)
           
  0.506
Bra016624
AT1G16920 (E=7e-117) RAB11, ATRABA1B | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding (216 aa)
           
  0.506
Bra013349
AT4G18800 (E=5e-115) ATHSGBP, ATRAB11B, ATRABA1D | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding (214 aa)
           
  0.506
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
   
   
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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