STRINGSTRING
Bra003014 protein (Brassica rapa) - STRING interaction network
"Bra003014" - AT5G54130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003014AT5G54130 (E=4e-255) | calcium-binding EF hand family protein (436 aa)    
Predicted Functional Partners:
Bra034266
AT3G61720 (E=1e-226) | C2 domain-containing protein (716 aa)
           
  0.476
Bra013774
AT4G24190 (E=0.0) SHD, HSP90.7 | SHD (SHEPHERD); ATP binding / unfolded protein binding (822 aa)
           
  0.468
Bra008269
AT1G76640 (E=7e-065) | calmodulin-related protein, putative (169 aa)
           
  0.410
Bra008268
AT1G76640 (E=1e-057) | calmodulin-related protein, putative (170 aa)
           
  0.410
Bra024724
AT1G26270 (E=7e-254) | phosphatidylinositol 3- and 4-kinase family protein (620 aa)
           
  0.408
Bra011020
AT1G26270 (E=2e-279) | phosphatidylinositol 3- and 4-kinase family protein (618 aa)
           
  0.408
Bra025774
AT1G19840 (E=9e-068) | auxin-responsive family protein (151 aa)
           
  0.406
Bra017068
AT2G39510 (E=3e-191) | nodulin MtN21 family protein (375 aa)
           
  0.406
Bra012063
AT3G53210 (E=3e-154) | nodulin MtN21 family protein (374 aa)
           
  0.406
Bra005033
AT2G39510 (E=2e-189) | nodulin MtN21 family protein (375 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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