STRINGSTRING
Bra003028 protein (Brassica rapa) - STRING interaction network
"Bra003028" - AT5G53860 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003028AT5G53860 (E=2e-179) emb2737 | emb2737 (embryo defective 2737) (433 aa)    
Predicted Functional Partners:
Bra030027
AT1G24340 (E=0.0) emb2421 | emb2421 (embryo defective 2421); monooxygenase/ oxidoreductase (709 aa)
           
  0.529
Bra023482
AT5G14710 (E=2e-060) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 85 Blast hits to 85 proteins in 29 species- Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (124 aa)
           
  0.505
Bra006264
AT5G14710 (E=1e-061) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 85 Blast hits to 85 proteins in 29 species- Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (124 aa)
           
  0.505
Bra002565
AT5G59440 (E=2e-108) ZEU1, ATTMPK.1 | ZEU1 (ZEUS1); ATP binding / thymidylate kinase (313 aa)
           
  0.477
Bra032408
AT1G30610 (E=0.0) emb2279 | emb2279 (embryo defective 2279) (951 aa)
     
   
  0.427
Bra019926
AT1G10510 (E=6e-281) emb2004 | emb2004 (embryo defective 2004) (597 aa)
     
   
  0.417
Bra006586
AT5G20935 (E=6e-047) | unknown protein (117 aa)
           
  0.414
Bra020215
AT5G22800 (E=0.0) EMB1030 | EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding ; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain (969 aa)
           
  0.414
Bra011346
AT4G32420 (E=6e-101) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (772 aa)
           
  0.406
Bra003604
AT1G79560 (E=0.0) EMB1047, FTSH12 | FTSH12 (FTSH PROTEASE 12); ATP-dependent peptidase/ ATPase/ metallopeptidase (1011 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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