STRINGSTRING
Bra003029 protein (Brassica rapa) - STRING interaction network
"Bra003029" - AT5G53850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003029AT5G53850 (E=2e-132) | haloacid dehalogenase-like hydrolase family protein (519 aa)    
Predicted Functional Partners:
Bra015169
AT2G05830 (E=3e-179) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein ; Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) (372 aa)
 
 
  0.992
Bra035994
AT5G43850 (E=3e-101) ATARD4, ARD4 | ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding ; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (187 aa)
 
 
  0.991
Bra027507
AT5G43850 (E=3e-097) ATARD4, ARD4 | ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding ; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (180 aa)
 
 
  0.991
Bra036884
AT4G14710 (E=4e-110) ATARD2 | acireductone dioxygenase [iron(II)-requiring]/ metal ion binding ; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (195 aa)
 
 
  0.990
Bra022676
AT5G53850 (E=1e-263) | haloacid dehalogenase-like hydrolase family protein (501 aa)
 
 
0.964
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
       
  0.833
Bra018795
AT1G49820 (E=1e-228) ATMTK | ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE); S-methyl-5-thioribose kinase (418 aa)
 
     
  0.806
Bra024620
AT1G70310 (E=8e-158) SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase (344 aa)
     
 
  0.718
Bra022631
AT5G53120 (E=2e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (355 aa)
     
 
  0.718
Bra020045
AT5G19530 (E=6e-184) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)
     
 
  0.718
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]