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Bra003036 protein (Brassica rapa) - STRING interaction network
"Bra003036" - AT5G28740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003036AT5G28740 (E=3e-019) | transcription-coupled DNA repair protein-related (167 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.987
Bra038771
AT4G21540 (E=3e-078) SPHK1 | SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (342 aa)
     
  0.987
Bra041053
AT5G41770 (E=3e-066) | crooked neck protein, putative / cell cycle protein, putative (384 aa)
     
  0.987
Bra038885
AT5G41770 (E=9e-131) | crooked neck protein, putative / cell cycle protein, putative (318 aa)
     
  0.987
Bra031930
AT5G41770 (E=6e-264) | crooked neck protein, putative / cell cycle protein, putative (667 aa)
     
  0.987
Bra028504
AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative (706 aa)
     
  0.987
Bra025462
AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative (706 aa)
     
  0.987
Bra023285
AT5G45990 (E=7e-019) | crooked neck protein, putative / cell cycle protein, putative (164 aa)
     
  0.987
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
     
  0.986
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
  0.983
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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