STRINGSTRING
Bra003041 protein (Brassica rapa) - STRING interaction network
"Bra003041" - AT5G49840 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003041AT5G49840 (E=4e-213) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (605 aa)    
Predicted Functional Partners:
Bra030504
AT1G02560 (E=2e-146) CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase (299 aa)
 
  0.959
Bra033332
AT1G02560 (E=1e-160) CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase (294 aa)
 
  0.959
Bra026972
AT1G12410 (E=1e-143) CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase (391 aa)
 
  0.958
Bra013020
AT5G23140 (E=3e-106) CLPP2, NCLPP7 | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase (235 aa)
 
  0.958
Bra009331
AT5G23140 (E=9e-109) CLPP2, NCLPP7 | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase (238 aa)
 
  0.957
Bra004177
AT1G66670 (E=8e-148) CLPP3, NCLPP3 | CLPP3; serine-type endopeptidase (313 aa)
 
  0.957
Bra025079
AT5G45390 (E=2e-127) CLPP4, NCLPP4 | CLPP4 (CLP PROTEASE P4); serine-type endopeptidase (288 aa)
 
  0.957
Bra031777
AT1G11750 (E=3e-128) CLPP6, NCLPP1, NCLPP6 | CLPP6; serine-type endopeptidase (273 aa)
 
  0.957
Bra016816
AT1G11750 (E=7e-129) CLPP6, NCLPP1, NCLPP6 | CLPP6; serine-type endopeptidase (270 aa)
 
  0.957
Bra019764
AT1G12410 (E=4e-152) CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase (279 aa)
 
  0.956
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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